morphoclass.transforms.augmentors.orient_apicals module

Implementation of the OrientApicals transform.

class morphoclass.transforms.augmentors.orient_apicals.OrientApicals(special_treatment_ipcs=False, special_treatment_hpcs=False)

Bases: object

Orient all apicals along the positive y-axis.

Parameters

  • special_treatment_ipcs (bool) – If True, then IPCs (inverted pyramidal cells) will be oriented along the negative y-axis

  • special_treatment_hpcs (bool) – If True, then HPCs (horizontal pyramidal cells) will be oriented along the positive x-axis