morphoclass package

Subpackages

• morphoclass.console package
  • Submodules
    • morphoclass.console.cmd_evaluate module
    • morphoclass.console.cmd_extract_features module
    • morphoclass.console.cmd_morphometrics module
    • morphoclass.console.cmd_organise_dataset module
    • morphoclass.console.cmd_performance_table module
    • morphoclass.console.cmd_plot_dataset_stats module
    • morphoclass.console.cmd_preprocess_dataset module
    • morphoclass.console.cmd_train module
    • morphoclass.console.cmd_xai module
    • morphoclass.console.dataset_preprocessor module
    • morphoclass.console.evaluate module
    • morphoclass.console.helpers module
    • morphoclass.console.main module
    • morphoclass.console.outlier_detection module
    • morphoclass.console.performance_table module
    • morphoclass.console.stats_plotter module
    • morphoclass.console.transfer_learning module
  • Module contents
• morphoclass.data package
  • Submodules
    • morphoclass.data.filters module
    • morphoclass.data.morphology_data module
    • morphoclass.data.morphology_data_loader module
    • morphoclass.data.morphology_dataset module
    • morphoclass.data.tns_dataset module
  • Module contents
• morphoclass.features package
  • Submodules
    • morphoclass.features.non_graph module
  • Module contents
• morphoclass.layers package
  • Submodules
    • morphoclass.layers.attention_global_pool module
    • morphoclass.layers.bidirectional_block module
    • morphoclass.layers.bidirectional_res_block module
    • morphoclass.layers.cat module
    • morphoclass.layers.cheb_conv module
    • morphoclass.layers.cheb_conv_separable module
    • morphoclass.layers.perslay module
    • morphoclass.layers.running_std module
    • morphoclass.layers.tree_lstm_pool module
  • Module contents
• morphoclass.models package
  • Submodules
    • morphoclass.models.bidirectional_net module
    • morphoclass.models.cnnet module
    • morphoclass.models.concatecnnet module
    • morphoclass.models.concatenet module
    • morphoclass.models.coriander_net module
    • morphoclass.models.hbnet module
    • morphoclass.models.man_net module
    • morphoclass.models.man_res_nets module
    • morphoclass.models.multi_adj_net module
  • Module contents
• morphoclass.morphometrics package
  • Submodules
    • morphoclass.morphometrics.cli module
  • Module contents
• morphoclass.report package
  • Submodules
    • morphoclass.report.plumbing module
    • morphoclass.report.xai module
  • Module contents
• morphoclass.training package
  • Subpackages
    • morphoclass.training.reports package
      • Submodules
      • Module contents
  • Submodules
    • morphoclass.training.cli module
    • morphoclass.training.rd_dataset_prep module
    • morphoclass.training.tns_utils module
    • morphoclass.training.trainers module
    • morphoclass.training.training_config module
    • morphoclass.training.training_log module
    • morphoclass.training.training_loop_cv module
    • morphoclass.training.training_loop_loo module
    • morphoclass.training.training_loop_regression module
    • morphoclass.training.training_loop_simple module
    • morphoclass.training.transfer_learning module
  • Module contents
• morphoclass.transforms package
  • Subpackages
    • morphoclass.transforms.augmentors package
      • Submodules
      • Module contents
    • morphoclass.transforms.edge_features package
      • Submodules
      • Module contents
    • morphoclass.transforms.global_features package
      • Submodules
      • Module contents
    • morphoclass.transforms.node_features package
      • Submodules
      • Module contents
    • morphoclass.transforms.scalers package
      • Submodules
      • Module contents
  • Submodules
    • morphoclass.transforms.add_one_hot_labels module
    • morphoclass.transforms.compose module
    • morphoclass.transforms.extract_tmd_neurites module
    • morphoclass.transforms.extract_tmd_neuron module
    • morphoclass.transforms.global_feature_to_label module
    • morphoclass.transforms.helper module
    • morphoclass.transforms.make_copy module
    • morphoclass.transforms.zero_out_features module
  • Module contents
• morphoclass.unsupervised package
  • Submodules
    • morphoclass.unsupervised.plotting module
  • Module contents
• morphoclass.xai package
  • Submodules
    • morphoclass.xai.embedding_extractor module
    • morphoclass.xai.embedding_visualization module
    • morphoclass.xai.grad_cam_explainer module
    • morphoclass.xai.grad_cam_on_models module
    • morphoclass.xai.model_attributions module
    • morphoclass.xai.node_saliency module
  • Module contents

Submodules

• morphoclass.cleanlab module
• morphoclass.constants module
• morphoclass.deepwalk module
• morphoclass.metrics module
• morphoclass.model_utils module
• morphoclass.orientation module
• morphoclass.types module
• morphoclass.utils module
• morphoclass.vis module

Module contents

MorphoClass - a package for neuron m-type classification using ML.